Re: [Freesurfer] recon-all bad talairach

2013-03-26 Thread Douglas N Greve
is not > horizontal. > i have attached a pic > Jon > > - Original Message - > From: "Douglas N Greve" > To: freesurfer@nmr.mgh.harvard.edu > Sent: Tuesday, March 26, 2013 11:28:01 AM > Subject: Re: [Freesurfer] recon-all bad talairach > > Hi

Re: [Freesurfer] recon-all bad talairach

2013-03-26 Thread Douglas N Greve
Hi Jon, the data are not reoriented or resliced into talairach space. It is just the transform that is computed. To inspect whether this was done right, use tkregister2 --s subject --fstal doug On 03/26/2013 12:20 PM, Jon Wieser wrote: > Hello > I ran recon-all auto_recon1. and the resulting