Re: [Freesurfer] recon-all -skullstrip issues

2019-10-30 Thread Greve, Douglas N.,Ph.D.
mgh.harvard.edu> Odesláno: pondělí 28. října 2019 15:34 Komu: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> Předmět: Re: [Freesurfer] recon-all -skullstrip issues Did you run recon-all from the beginning? It needs to create th

Re: [Freesurfer] recon-all -skullstrip issues

2019-10-28 Thread Adam Rytina
: pondělí 28. října 2019 15:34 Komu: freesurfer@nmr.mgh.harvard.edu Předmět: Re: [Freesurfer] recon-all -skullstrip issues Did you run recon-all from the beginning? It needs to create those files On 10/27/19 3:18 PM, Adam Rytina wrote: External Email - Use Caution Hello all, I´m struggling

Re: [Freesurfer] recon-all -skullstrip issues

2019-10-28 Thread Greve, Douglas N.,Ph.D.
Did you run recon-all from the beginning? It needs to create those files On 10/27/19 3:18 PM, Adam Rytina wrote: External Email - Use Caution Hello all, I´m struggling with running "recon-all -skullstrip", in general with "recon-all". I added NIfTI series file to a new directory "QWE"

[Freesurfer] recon-all -skullstrip issues

2019-10-27 Thread Adam Rytina
External Email - Use Caution Hello all, I´m struggling with running "recon-all -skullstrip", in general with "recon-all". I added NIfTI series file to a new directory "QWE" (/usr/local/freesurfer/subjects/QWE) and running the skull stripping "mri_watershed /usr/local/freesurfer