On 2/11/2020 9:26 AM, Benjamin Ineichen wrote:
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Dear Freesurfer experts,
I ran recon-all on 100 subjects. Around 20 of them needed manual
corrections of the pial surface on the brainmask.mgz.
1.) Can I run the command: "recon-all -make all- s " on all
10
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Dear Freesurfer experts,
I ran recon-all on 100 subjects. Around 20 of them needed manual
corrections of the pial surface on the brainmask.mgz.
1.) Can I run the command: "recon-all -make all- s " on all 100
subjects and it will only recon-all the manu
Hi Vasudev
you don't need the whole path for the -s switch, just the subject ID (in
this case it looks like HC13)
cheers
Bruce
On Mon, 8 Oct 2018, Dev vasu wrote:
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Dear all,
I am encountering following error whenever i re-rerun my recon-all on
External Email - Use Caution
Dear all,
I am encountering following error whenever i re-rerun my recon-all on
cluster,,although i have downloaded new development version of
recon-all.makefile, this error persists,kindly let me know what i am doing
wrong
recon-all -make all -s /hom
Hello,
I am reprocessing a number of subjects from fs 4.5.0 to fs 5.0.0. I am
doing this by issuing the "recon-all -make all -s subject" command. It
stops right away with the message:
make: Nothing to be done for `all'.
There exists the wmparc.stats file from the fs450 recon, but there is
no la
Are the inputs (001.mgz and 002.mgz) the same size? They have slightly
different acquisition parameters, which is not a good sign ...
aekai...@umich.edu wrote:
> Hi again,
>
> The disk is not full and attached is the recon-all.log
>
>
> best,
>
> Anson K.
>
> University of Michigan
> On Mon, 19 J
can you send us your full command line and recon-all.log, and please check
to make sure that you didn't run out of disk space?
On Mon,
19 Jul 2010 aekai...@umich.edu wrote:
>
> Hi freesurfers,
>
> I just got this error while continuing processing of a subject:
>
> mri_average:
> MRIread(/PROJEC
is that disk full?
doug
aekai...@umich.edu wrote:
> Hi freesurfers,
>
> I just got this error while continuing processing of a subject:
>
> mri_average:
> MRIread(/PROJECTS/TOBIASS/SPM_software/freesurfer/subjects/VBM_SLE/NPSLE/bittner/mri/tmp-mri_motion_correct.fsl-25287/cor-2.img)
> failed
> Li
Hi freesurfers,
I just got this error while continuing processing of a subject:
mri_average:
MRIread(/PROJECTS/TOBIASS/SPM_software/freesurfer/subjects/VBM_SLE/NPSLE/bittner/mri/tmp-mri_motion_correct.fsl-25287/cor-2.img)
failed
Linux titan 2.6.18-128.el5 #1 SMP Wed Dec 17 11:41:38 EST 2008 x86_
