Re: [Freesurfer] recon-all: aparc+aseg.mgz missing labels

2025-02-12 Thread Douglas N. Greve
The 5th vent, non-wm-hypos, left and right vessel are not worrisome. The left and right cerebral cortex are probably just a few voxels that did not get recoded to the surface parcellation. The ento and parahippo  are probably a segmentation error (good that there are only a few of them:) On 2/

[Freesurfer] recon-all: aparc+aseg.mgz missing labels

2025-02-07 Thread tomjandr...@sky.com
External Email - Use Caution Hello, I have run recon-all on ~1600 participants and will use the aparc+aseg.mgz parcellation to extract structural connectomes.Across the dataset, the number of labels in each parcellations ranges from 109 to 115. Where can I find a complete list o