Re: [Freesurfer] re Annotation2label

2013-08-07 Thread Linn Mittlestein
Thank you. I also have one question; it says default is "white" surface, but I want measure cortical thickness. Can I leave white in or do I change --surf to gray for this? Kind Wishes, Linn On Tue, Aug 6, 2013 at 6:50 PM, Douglas N Greve wrote: > > Use --annotation aparc.a2009s > Run it with

Re: [Freesurfer] re Annotation2label

2013-08-06 Thread Douglas N Greve
Use --annotation aparc.a2009s Run it with --help to see all the options. doug On 08/06/2013 08:24 AM, Linn Mittlestein wrote: > Hi all, > > I bit confused about how to create labels from annotation2label > command to create DLPFC. I want make DLPFC label by merging > G_frontal_middle.label, S_

[Freesurfer] re Annotation2label

2013-08-06 Thread Linn Mittlestein
Hi all, I bit confused about how to create labels from annotation2label command to create DLPFC. I want make DLPFC label by merging G_frontal_middle.label, S_frontal_inferior.label and S_frontal_middle.label (available in the 2009 atlas). But I only can get annotation2label to work with the other