updated stats files aseg.stats and ?h.aparc.stats incorporate any changes
made.
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Alexopoulos, Dimitrios
Sent: Monday, July 10, 2023 11:44 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] re-running recon-all after as
Subject: Re: [Freesurfer] re-running recon-all after aseg.presurf.mgz edits
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With '-autorecon2-noaseg -autorecon3', I believe aseg.mgz is re-created. So,
aseg.stats should reflect the changes.
I'm not sure cor
rom: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Alexopoulos, Dimitrios
Sent: Thursday, June 29, 2023 4:57 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] re-running recon-all after aseg.presurf.mgz edits
External Email - Use Caution
A few quick questions FS experts.
External Email - Use Caution
A few quick questions FS experts.
I made manual edits on subcortical structures in outputs from FS6.0.
Specifically, I made the edits on the aseg.presurf.mgz file. I then reran using:
recon-all -s neo267e_nil -autorecon2-noaseg -autorecon3
Do the upd
Hi Kevin
yes, I think that should work.
cheers
Bruce
On Fri, 30 Dec 2016, Kevin Aquino wrote:
Hi all,
When V6 is released I'd want to re-run all my (10) subjects through
recon-all again (they were processed with v6 alpha). I'd like to keep all my
wm edits, mask and control points, is it as e
Hi all,
When V6 is released I'd want to re-run all my (10) subjects through
recon-all again (they were processed with v6 alpha). I'd like to keep all
my wm edits, mask and control points, is it as easy as just running
recon-all on the same folder again? They are 0.7mm so I'd like to keep all
the c
Not our fault! The best kind of problem :)
On Jul 20, 2011, at 8:36 PM, Satrajit Ghosh wrote:
> update: node on cluster had failing memory chip!
>
> cheers,
>
> satra
>
>
> On Mon, Jul 18, 2011 at 4:16 PM, Satrajit Ghosh wrote:
> hi all,
>
> i'm trying to rerun some subjects processed wi
update: node on cluster had failing memory chip!
cheers,
satra
On Mon, Jul 18, 2011 at 4:16 PM, Satrajit Ghosh wrote:
> hi all,
>
> i'm trying to rerun some subjects processed with 5.0 with 5.1 and am
> getting the following error on all the subjects.
>
> simply executing recon-all -s subjid
hi all,
i'm trying to rerun some subjects processed with 5.0 with 5.1 and am getting
the following error on all the subjects.
simply executing recon-all -s subjid -all
any ideas?
cheers,
satra
-- unfolding failed - restoring original position
0750: dt=0.001250, r
it will run them all again.
On Wed, 24 Jan 2007, Catherine Hartley wrote:
Hi,
If recon-all is interrupted after several hours of processing (someone
shutdown the machine), if I run recon-all again on the same set of data,
will it go through all of the processing steps again, or will it note th
Cate,
It will restart from the beginning. Making it behave like the 'make'
utility, which checks input and output file dates and file existence
before doing work, is a long-term goal for our recon-all, but not
anytime soon.
You can restart recon-all at particular stages by manually checking the
Hi,
If recon-all is interrupted after several hours of processing (someone
shutdown the machine), if I run recon-all again on the same set of data,
will it go through all of the processing steps again, or will it note the
progress made and essentially check through until it reaches the prior point
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