Guang,
brainmask.auto.mgz (and all the volume files produced in the recon-all
stream) remain in native space. you can add -nowsatlas after
-skullstrip to recon-all to see the results without the atlas (results
differ depending on the input). the tal transforms are used only to
align the atlas, a
Hi, there,
In the skullstrip step, mri_em_register command is called and a
talairach_with_skull.lta file is produced.
This lta file will be used in the following mri_watershed command.
My questions are:
(1) Once we got the brainmask.auto.mgz, which command we can use to inverse the
