Original Message-
> From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-
> boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
> Sent: Thursday, July 07, 2016 12:29 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] question about exporting volumes
You can view it in freesurfer with
cd $SUBJECTS_DIR/subject/mri
freeview -v orig.mgz -v
aseg.mgz:lut=$FREESURFER_HOME/FreeSurferColorLUT.txt:opacity=.3:colormap=lut
I don't know anything about COMSOL
On 07/07/2016 12:25 PM, Dorsa Haji Ghaffari wrote:
> Thank you. I want to view the thalamus as
Thank you. I want to view the thalamus as a volume in freesurfer. Do you
know how to do that? also by exporting I mean exporting it as a volume and
then import it into COMSOL as a geometry.
Thank you for your help!
Dorsa
On Wed, Jul 6, 2016 at 7:50 PM, Douglas N Greve
wrote:
> what do you mea
what do you mean isolate? what do you mean export? You can create a
binary mask in nifti format with mri_binarize --i aseg.mgz --match 10 49
--o thalamus.mask.nii.gz
On 07/06/2016 04:46 PM, Dorsa Haji Ghaffari wrote:
>
>
>
> Hi,
>
> I was able to segment the MRI successfully, now I am trying to
Hi,
I was able to segment the MRI successfully, now I am trying to isolate the
thalamus and export it out of FS as a volume. Is there a way to do that in
FS?
Thank you
Dorsa
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