That fixed the error.
Thank you so much for your help!
Marissa Pifer
On Wed, May 11, 2016 at 11:32 AM, Douglas N Greve wrote:
> Try re-running recon-all -qcache for that subject and see if the error
> goes away
>
> On 05/11/2016 10:56 AM, Marissa Pifer wrote:
> > The error was generated on tha
Try re-running recon-all -qcache for that subject and see if the error
goes away
On 05/11/2016 10:56 AM, Marissa Pifer wrote:
> The error was generated on that first subject 03-1, but it was
> successful on all of the other subjects. Is there something wrong with
> that file that we have to exc
The error was generated on that first subject 03-1, but it was successful
on all of the other subjects. Is there something wrong with that file that
we have to exclude that subject from the analysis?
Marissa
On Wed, May 11, 2016 at 10:38 AM, Douglas Greve
wrote:
> OK, it is failing on the mri_
OK, it is failing on the mri_concat command. It may be that one of
those inputs is causing the problem. Can you run the command with each
input separately, eg,
mri_concat
/Users/marchaut/Documents/myprojects/SOARmaster/SOAR03-1.long.SOAR03/surf/lh.thickness.fwhm10.fsaverage.mgh
--o deleteme.mg
Here is everything in the terminal after I hit analyze:
Data table loading completed successfully.
SUBJECTS_DIR is '/Users/marchaut/Documents/myprojects/SOARmaster'
lh-Avg-Intercept-thickness ---
Does the average thickness differ from zero?
1.000 1.000;
lh-Diff-1-2-Int
Is that all it says? At one point (about 3-4 years ago) we would see
that error because some of our files got corrupted. Can you send more of
the terminal output?
On 05/10/2016 12:56 PM, Marissa Pifer wrote:
> Hi freesurfers,
>
> I am on a macbook pro OSX 10.9.5, trying to run an analysis on qde
Hi freesurfers,
I am on a macbook pro OSX 10.9.5, trying to run an analysis on qdec -
freesurfer version 5.3. I am looking to analyze T2weighted scans for 27
subjects through the qdec system. I keep getting this error that it cannot
allocate memory for the task. I'v been talking with our IT people
Richard,
Which version of freesurfer is being used? You can find out by typing
'bugr'. Does this memory problem occur for all analysis types, or just
the one that you describe?
Nick
On Sat, 2008-10-11 at 15:54 -0500, Richard Frye wrote:
> I am running qdec on a Mac Pro OS X 10.5.5 with dual qu
I am running qdec on a Mac Pro OS X 10.5.5 with dual quad pentiums mirrored
RAID and 16GB memory.
I have followed the instruction for creating the qdec table, loaded the data
in successfully and requested an analysis with two continuous variance. The
following is the final output before it crashes
