Re: [Freesurfer] processing steps

2006-09-25 Thread Graham Wideman
Claudia -- With your line of questioning, you may also might like to look at: http://grahamwideman.com/gw/brain/fs/index.htm ... particularly ... http://grahamwideman.com/gw/brain/fs/fsunderstanding2006/processvsdata2006.htm Graham At 9/25/2006 10:29 AM, you wrote: Hi,   I have just started t

Re: [Freesurfer] processing steps

2006-09-25 Thread Nick Schmansky
Claudia, I'll try to answer some of your questions, in each section below: On Mon, 2006-09-25 at 18:29 +0100, claudia wheeler-kingshott wrote: > Hi, > > I have just started to look at freesurfer and decided to run each step > to try to understand what recon-all does. Some resources to learn th

[Freesurfer] processing steps

2006-09-25 Thread claudia wheeler-kingshott
Hi,   I have just started to look at freesurfer and decided to run each step to try to understand what recon-all does.   Well, after a bit of teething to put the data in the right orientation, we managed to start, but we have a few questions :-)   First of all, our SPGR data is 1.2x1.2x1.2mm^