When setting SUBJECTS_DIR, you have to specify the actual path to the
“test_subjects” directory that you created. "/path/to/test_subjects" isn’t a
real path on your computer. In your case, the path might be something like
"/Users/DannyDeng/test_subjects”
In recon-all, the -i flag is used to des
Hi Andrew,
I have followed your suggestion and the error pop up like this:
Xues-MacBook-Air:~ DannyDeng$ mkdir test_subjects
mkdir: test_subjects: File exists
Xues-MacBook-Air:~ DannyDeng$ export SUBJECTS_DIR=/path/to/test_subjects
Xues-MacBook-Air:~ DannyDeng$ cd${FREESURFER_HOME}/subjects/sampl
Hi Danny,
The SUBJECTS_DIR variable defines the path to a directory where freesurfer
recon data is stored for a particular study. When setting this path variable,
you don’t need to include the <> brackets.
After sourcing freesurfer, start by making a sample directory and defining your
SUBJECTS
Hi developers,
I just installed the software and there are so many problems I wish to seek
help from you when I tried “Test your freesurfer installation” on the website
Example 2
I tried several commands as follow but all failed:
1. Xues-MacBook-Air:~ DannyDeng$ export
SUBJECTS_DIR=<$FREESURF
