Re: [Freesurfer] problem on freesurfer

2010-03-08 Thread Allison Stevens
gt; have tried to change the threshold value, not good result)? > > Looking forward to your early reply. > > Best, > Xiaoying > > - Original Message - > From: Bruce Fischl > Date: Friday, March 5, 2010 8:41 am > Subject: Re: [Freesurfer] problem on freesur

Re: [Freesurfer] problem on freesurfer

2010-03-05 Thread Xiaoying Tang
t: Re: [Freesurfer] problem on freesurfer To: Xiaoying Tang Cc: ni...@nmr.mgh.harvard.edu, Freesurfer@nmr.mgh.harvard.edu > Hi Xiaoying, > > there are gray matter estimates in aseg.mgz, but you need to run > autorecon3 to get the surfaces that let us estimate cortical gm m

Re: [Freesurfer] problem on freesurfer

2010-03-05 Thread Bruce Fischl
Hi Xiaoying, there are gray matter estimates in aseg.mgz, but you need to run autorecon3 to get the surfaces that let us estimate cortical gm most accurately. cheers, Bruce On Fri, 5 Mar 2010, Xiaoying Tang wrote: > Hi Nick, > > Sorry, I am not sure whether I can successfully post my problem o

[Freesurfer] problem on freesurfer

2010-03-04 Thread Xiaoying Tang
Hi Nick, Sorry, I am not sure whether I can successfully post my problem on the mailing list. So I send you the email and cc it to the mailing list. I now have a problem on freesurfer. After run auto-recon2, I am supposed to get grey matter and white matter. The white matter is in the form of w