Re: [Freesurfer] pre-processing functional data error

The terminal output looks ok. Do you mean that there is something wrong with the output volume? What? doug On 11/12/2012 11:30 AM, Yangmei LUO wrote: > Hi Douglas, > > It appeared the same error as before. The picture of the results is > the same. I am so sorry. > Thanks again! > > Best, > Yangm

Re: [Freesurfer] pre-processing functional data error

sorry, remove the slash from the end of the line On 11/12/2012 10:49 AM, Yangmei LUO wrote: > Hi Douglas, > > Thank you for your kind help. The command still can not work. > > $ /usr/local/freesurfer/bin/mri_convert.linux I0001.dcm s105.run1.nii/ > > /usr/local/freesurfer/bin/mri_convert.linux I00

Re: [Freesurfer] pre-processing functional data error

/Run this command line instead mri_convert.linux I0001.dcm s105.run1.nii/ doug On 11/09/2012 01:57 PM, Yangmei LUO wrote: > Hi Dr, Douglas, > > I attached the capture of the result using fslview. > > Thanks very much! > > Yangmei > > On Fri, Nov 9, 2012 at 12:51 PM, Yangmei LUO

Re: [Freesurfer] pre-processing functional data error

Are they straight off of the scanner or did you anonymize them? Can you send me one of the dicom files? doug On 11/09/2012 11:39 AM, Yangmei LUO wrote: > > Hi there, > > > I am a newbie and I used data collected from SIEMENS 3T to practice. > It works well when I tried to preprocess structural d

[Freesurfer] pre-processing functional data error

Hi there, I am a newbie and I used data collected from SIEMENS 3T to practice. It works well when I tried to preprocess structural data using freesurfer. However, there is a problem when I tried to convert the functional data in DICOM into NII using freesurfer. The problem I can not solve, so I t