Re: [Freesurfer] plotting mean T1/T2 values in the different cortical layers

2018-12-31 Thread Bruce Fischl
Hi Ani you should just use the surface that you created at the specified depth, and use a projfrac of 0 (or depth), since the surface is already at the place you wish to sample cheers Bruce On Wed, 26 Dec 2018, Anik Dar wrote: External Email - Use Caution Hi All, I have cr

[Freesurfer] plotting mean T1/T2 values in the different cortical layers

2018-12-26 Thread Anik Dar
External Email - Use Caution Hi All, I have created cortical surfaces corresponding to 25%, 50%, 75% of the cortex. Now I want to plot the T1/T2 values corresponding to these different layers.I believe I have to use mri_vol2surf. What options in the mri_vol2surf do I need to use