Re: [Freesurfer] pial surface midline fix

2013-07-18 Thread Bruce Fischl
Hi Jason does the aseg get the hemispheres right? Is the cc properly labeled? cheers Bruce On Thu, 18 Jul 2013, Louis Nicholas Vinke wrote: > Hi Jason, > If the hemi masks look peculiar in the filled.mgz then you can try seed > points for the corpus callosum. See this page for details, go to s

Re: [Freesurfer] pial surface midline fix

2013-07-18 Thread Louis Nicholas Vinke
Hi Jason, If the hemi masks look peculiar in the filled.mgz then you can try seed points for the corpus callosum. See this page for details, go to section titled "seed points, fill and cut". https://surfer.nmr.mgh.harvard.edu/fswiki/Edits -Louis On Thu, 18 Jul 2013, Jason Tourville wrote: >

[Freesurfer] pial surface midline fix

2013-07-18 Thread Jason Tourville
Hi, I've encountered a recon-all'ed scan in which the pial surface along the posterior midline "jumps" on cortex in the opposite hemisphere. Is there a simple fix for this, perhaps using a hemisphere mask? Thanks, Jason -- Jason A. Tourville, Ph.D. Research Assistant Professor Department of Spee