Re: [Freesurfer] parallel openmp

2018-07-19 Thread Bruce Fischl
Hi John so, you don't want to give recon-all multiple subjects. If you have enough ram you should just call it once for each subject and not use the openmp flag cheers Bruce On Thu, 19 Jul 2018, John Absher wrote: External Email - Use Caution We are trying to run many subj

[Freesurfer] parallel openmp

2018-07-19 Thread John Absher
External Email - Use Caution We are trying to run many subjects through recon-all in batches on an 8 core Windows Server on which we have virtualBox running CentOS7 and freesurfer 6. Can you tell me if this command will utilize all 8 cores effectively to process all 8 subjects s