Re: [Freesurfer] outputs for recon-all of T1-weighted and intersubject registration

2022-12-12 Thread Douglas N. Greve
It all must be done. There is no tissue type segmentation per se. You can get it from the aseg.mgz The 3rd question is about FSL commands. you should contact FSL On 12/5/2022 5:50 PM, Zeng, Qi wrote: External Email - Use Caution Hi Freesurfer experts, If I just want to normalize, re

[Freesurfer] outputs for recon-all of T1-weighted and intersubject registration

2022-12-05 Thread Zeng, Qi
External Email - Use Caution Hi Freesurfer experts, If I just want to normalize, register, and segment the T1-weighted images to the GM, WM, and CSF tissues, can certain steps be skipped from recon-all, such as the inflation process? What is the output for the segmentation of GM,