Re: [Freesurfer] orientation of the data

2010-05-03 Thread Bruce Fischl
what format is your input data in? On Mon, 3 May 2010, Ilana Hairston wrote: > I have also been getting error messages, after Talairach correction using > tkregister2 > > *...@# Talairach Failure Detection Mon May 3 09:57:40 EDT 2010 > /usr/local/freesurfer/subjects/FS060828cr/mri > > talairach_a

Re: [Freesurfer] orientation of the data

2010-05-03 Thread Ilana Hairston
I have also been getting error messages, after Talairach correction using tkregister2 *...@# Talairach Failure Detection Mon May 3 09:57:40 EDT 2010 /usr/local/freesurfer/subjects/FS060828cr/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms

Re: [Freesurfer] orientation of the data

2010-05-03 Thread Bruce Fischl
Hi Jan, what was your input data? Bruce On Mon, 3 May 2010, Janani Dhinakaran wrote: > Hello experts, > > I've been having some trouble with the talairach during recon. I followed > previous instructions and checked the rawavg image and found that it was in > wrongly oriented. > The sagittal pic

[Freesurfer] orientation of the data

2010-05-03 Thread Janani Dhinakaran
Hello experts, I've been having some trouble with the talairach during recon. I followed previous instructions and checked the rawavg image and found that it was in wrongly oriented. The sagittal picture was appearing under coronal but upsidedown, the coronal picture was sideways in the transverse