Re: [Freesurfer] nuisance factors in QDEC

2013-12-02 Thread Douglas N Greve
On 12/02/2013 09:05 AM, Yolanda Vives wrote: > Dear FreeSurfer experts, > > I am performing a DODS analysis with QDEC to compare cortical > thickness of patients and controls and I have some questions regarding > the nuisance factors age and global cortical thickness. > > 1.- Should I demean bot

[Freesurfer] nuisance factors in QDEC

2013-12-02 Thread Yolanda Vives
Dear FreeSurfer experts, I am performing a DODS analysis with QDEC to compare cortical thickness of patients and controls and I have some questions regarding the nuisance factors age and global cortical thickness. 1.- Should I demean both variables or only the age? 2.- Which of the following opt

Re: [Freesurfer] "Nuisance factors" in Qdec

2013-09-17 Thread ye tian
Dear Doug, Thank you very much! Sincerely, Ye On Tue, Aug 13, 2013 at 11:39 PM, Douglas Greve wrote: > > If x1 and x2 are the same thing, then the equation is non-invertible. If > they are the not the same variable, then there is no problem. QDEC computes > all the contrasts for you (but exclud

Re: [Freesurfer] "Nuisance factors" in Qdec

2013-08-13 Thread Douglas Greve
If x1 and x2 are the same thing, then the equation is non-invertible. If they are the not the same variable, then there is no problem. QDEC computes all the contrasts for you (but excludes contrasts with nuisance variables) doug On 8/13/13 3:03 PM, ye tian wrote: Dear Doug, I am afraid t

Re: [Freesurfer] "Nuisance factors" in Qdec

2013-08-13 Thread ye tian
Dear Doug, I am afraid that I still don't understand why a variable can not be "covarying" and "nuisance" simultaneously. If variables x1 and x2 are covarying, they both go into the model y = b0 + x1*b1 + x2*b2 + err Is this correct? Nuisance, however, is related to the contrast, i.e., test hypo

Re: [Freesurfer] "Nuisance factors" in Qdec

2013-08-13 Thread Douglas N Greve
Hi Ye, don't select the same factor as nuisance and covariate. It will result in an error for sure. The difference between a covariate and a "nuisance" factor is purely conceptual. By calling something a nuisance you tell QDEC not to create a contrast related to it. doug On 08/13/2013 02:09 A

[Freesurfer] "Nuisance factors" in Qdec

2013-08-12 Thread ye tian
Dear Freesurfers, I have a question concerning the "nuisance factors" in the qdec dialogue. Suppose I have two independent variables x1 (discrete) and x2 (continuous), and only one observable y. I choose "Discrete (Fixed factor) = x1", "Continuous (covariate) = x2". If I further chose "Nuisance f