Hi,
I am having trouble removing the pons with recon-all -stage1 -pons-xyz.
I've tried five pons coords, unsuccessfully.
When you move the mouse location in the sagittal, horizontal, and coronal
images,
the slice numbers change. When I get the talairach coords for the pons,
should the slice numbe
Hi,
For one subject's data, "process volume" didn't get the skull stripped.
The skull was there intact in "brain" volumes.
To correct it,
I used "expert preferences" and used "don't use watershed analyze", which
led to most of the skull removed in "brain" volumes.
But still there are pieces of th
You can tell recon-all not to touch the talairach.xfm file by adding
-notalairaach to the command-line
doug
On Thu, 6 Jan 2005, Joongnam Yang wrote:
Thanks Bruce,
How would I specify the new talairach.xfm in the run of recon-all -stage1.
If I copy the new file into the usual /mri/transforms directo
Thanks Bruce,
How would I specify the new talairach.xfm in the run of recon-all -stage1.
If I copy the new file into the usual /mri/transforms directory, it's
overwritten
during the recon-all process.
Comments are appreciated.
Nam.
>>> Bruce Fischl <[EMAIL PROTECTED]> 01/06/05 4:55 PM >>>
chec
check the talairach transform
On Thu, 6 Jan 2005, Joongnam Yang wrote:
Hi,
During recon-all -stage1 running, I got the following error.
...
MRInormalize: could not find any valid peaks
No such file or directory
mri_normalize: normalization failed
No such file or directory
ERROR: mri_normalize e
Hi,
During recon-all -stage1 running, I got the following error.
...
MRInormalize: could not find any valid peaks
No such file or directory
mri_normalize: normalization failed
No such file or directory
ERROR: mri_normalize exited with non-zero status
-
Any suggestion would be appreciated.
Na
