Hi, FreeSurfer experts
I want to generate an average surface and volume using make_average_subject
command based on some of my non-human primate data, which do not have
aparc.annot data. I wonder if it is possible with FS. From the archive, I found
some emails entitled "no seg", in which a --no
yes, that should work
On 6/4/12 6:53 PM, mdkrue...@uwalumni.com wrote:
> doug-
>
> When i try to do this it still brings up an error with the
> make_average_subject regarding the --no-aseg as a subject to be
> averaged. I went ahead and ran make_average_surface and
> make_average_volume with a --n
doug-
When i try to do this it still brings up an error with the
make_average_subject regarding the --no-aseg as a subject to be
averaged. I went ahead and ran make_average_surface and
make_average_volume with a --no-aseg flag. This should recreate the
process of the make_average_subject correct?
you should be able to run make_average_subject with --no-aseg
On 06/04/2012 06:25 PM, mdkrue...@uwalumni.com wrote:
> so what i should be able to do is run make_average_surface and
> make_average_volume separately with a --no-aseg flag on
> make_average_volume.
>
> On 6/4/12, Gregory Kirk wrote:
so what i should be able to do is run make_average_surface and
make_average_volume separately with a --no-aseg flag on
make_average_volume.
On 6/4/12, Gregory Kirk wrote:
> so it seems that i ran make_average_volume which does have a --no-aseg flag
>
> make_average_subject really just runs 2 othe
FYI when the --no-aseg option is used with make_average_subject, it gets
passed to make_average_volume
doug
On 06/04/2012 01:56 PM, Gregory Kirk wrote:
> so it seems that i ran make_average_volume which does have a --no-aseg flag
>
> make_average_subject really just runs 2 other commands
> make_a
so it seems that i ran make_average_volume which does have a --no-aseg flag
make_average_subject really just runs 2 other commands
make_average_surface and make_average_volume.
bruce the reason i did this is that mike was running a `super` average, i.e.
the average
subject of 2 different syudies
Hi Michael
a couple of typos. It should be "make_average_subject" (note no "s"), and
it should be --subjects (note the ending "s"). I also don't see a flag
named --no-aseg, which I think is why it's being included as a subject.
What are you trying to do?
cheers
Bruce
On Mon, 4 Jun 2012, mic
Hi all -
Having a bit of an issue with trying to run a make_average with the flag
--no-aseg. When written
make_average_subjects --subject subject1 subject2 --no-aseg --out
superaverage
the propt runs as if --no-aseg and --out superaverage are subjects i wish
to average in with subjects1 and subj
