Re: [Freesurfer] mris_twoclass

2005-01-28 Thread Keyma Prince
Thanks, I also ran mris_glm for thickness differences based on age of the subjects with the following command and got the following output. Can you tell me how to I can read the results in tksurfer? mris_glm --design ons_glm.mtx --hemi lh --surfmeas thickness --trgsubj average_ons -nsmooth 50 --b

Re: [Freesurfer] mris_twoclass

2005-01-28 Thread Bruce Fischl
Hi Keyma, I'll leave this for Doug (or Brian). Bruce On Fri, 28 Jan 2005, Keyma Prince wrote: > Thanks, > > I also ran mris_glm for thickness differences based on age of the subjects > with the following command and got the following output. Can you tell me > how to I can read the results in

Re: [Freesurfer] mris_twoclass

2005-01-28 Thread Bruce Fischl
Hi Keyma, mris_twoclass is for making maps of thickness differences, not for the output of parcellate_subject, which you can just import into excel (using mris_anatomical_stats -a $annot_file -b $subject $hemi. In any case, mris_twoclass has been deprecated since Doug wrote mris_glm cheers, Br

[Freesurfer] mris_twoclass

2005-01-28 Thread Keyma Prince
Hello, I am trying to use mri_twoclass for the first time to do a simple comparision of means for the output from parcellate_subject(i.e. cortical thickness and cortical volume) between 2 groups. This the command line i'm using but I keep getting the following output: mris_twoclass -o average7 lh