a document that I had created using a Mac. Perhaps the issue had
something to do with that process. Thank you very much for your help in
troubleshooting.
Rosa
> Original Message
> Subject: Re: [Freesurfer] mris_preproc --fsgd
ssage --------
>> Subject: Re: [Freesurfer] mris_preproc --fsgd
>> From:"Douglas N Greve"
>> Date:Thu, September 13, 2012 11:53 am
>> To: freesurfer@nmr.mgh.harvard.edu
>> --
age
> Subject: Re: [Freesurfer] mris_preproc --fsgd
> From:"Douglas N Greve"
> Date:Thu, September 13, 2012 11:53 am
> To: freesurfer@nmr.mgh.harvard.edu
>
um.thickness.00.mgh --paired-diff-norm --prune )
> if ( $paireddiffnorm1 ) set cmd = ( $cmd --paired-diff-norm1 --prune ) ;
> if ( 0 ) set cmd = ( mri_concat
> ./tmp.mris_preproc.10777/FSrecon_oaeaa005.1.mgh
> ./tmp.mris_preproc.10777/FSrecon_oaeaa006.2.mgh --o
> rh.oa_txeffect_verum
)
echo "---" | tee -a $LF
echo ---
tee -a rh.oa_txeffect_verum.thickness.00.mris_preproc.log
---
echo $cmd | tee -a $LF
echo rm -r ./tmp.mris_preproc.10777
tee -a rh.oa_txeffect_verum.thickness.00.mris_preproc.log
rm -r ./tmp.mris_preproc.1
Can you run it with --debug as the first option and send me the terminal
output? It will be a lot, so capture it like this:
mris_preproc ... |& tee proroc.log
doug
On 09/12/2012 04:43 PM, spa...@nmr.mgh.harvard.edu wrote:
> Hi,
>
> I am trying to run mris_preproc on a set of 22 subjects (specif
Hi,
I am trying to run mris_preproc on a set of 22 subjects (specified in my
fsgd file), but the command only runs on the first subject listed in my
fsgd file, and none of the subsequent subjects.
I run the command:
mris_preproc --fsgd oa_txeffect_verum.fsgd --target fsaverage --hemi lh
--meas th
