;>
>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Zachary
>> Greenberg
>> Sent: Wednesday, March 04, 2015 7:05 PM
>> To: Freesurfer support list
>> Subject: Re: [Freesurfer] mris_convert lh.pial t
Of Zachary Greenberg
Sent: Wednesday, March 04, 2015 7:47 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] mris_convert lh.pial to lh.pial.asc coordinate shift
awesome! thanks a bunch Don.
-zack
On Wed, Mar 4, 2015 at 4:24 PM, Krieger, Donald N.
mailto:krieg...@upmc.edu>> wrote:
H
f Pittsburgh
>
>
>
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu [mailto:
> freesurfer-boun...@nmr.mgh.harvard.edu] *On Behalf Of *Zachary Greenberg
> *Sent:* Wednesday, March 04, 2015 7:05 PM
> *To:* Freesurfer support list
> *Subject:* Re: [Freesurfer] mris_convert lh.pial to lh.pial.asc
>
half Of Zachary
Greenberg
Sent: Wednesday, March 04, 2015 7:05 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] mris_convert lh.pial to lh.pial.asc coordinate
shift
Thanks bruce. It will work out fine if I can just pull out that c_(ras)
array in a pipelined way to apply it to the asc
ment of Neurological Surgery
University of Pittsburgh
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Zachary Greenberg
Sent: Wednesday, March 04, 2015 7:05 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] mris_convert lh.pial to lh.p
Thanks bruce. It will work out fine if I can just pull out that c_(ras)
array in a pipelined way to apply it to the ascii data.
I'm struggling a bit to achieve that though. I think because mris_info
outputs the tables of *_(ras) info in a strange way. For example, if I try
to cat the output of mri
Hi Zack
the ascii format I don't think supports the c_ras info, which is why you
see a shift
cheers
Bruce
On Wed, 4 Mar 2015, Zachary Greenberg wrote:
Ok I figured out that this shift corresponds to the c_(RAS) value in the
header of lh.pial, which you can get with 'mris_info lh.pial'
Altern
Ok I figured out that this shift corresponds to the c_(RAS) value in the
header of lh.pial, which you can get with 'mris_info lh.pial'
Alternatively you can get the first coordinate and subtract it from the
first coordinate of lh.pial.asc with 'mris_info lh.pial --v 0'
Is there a way I'm not thin
Hi all,
I discovered that converting the mesh data from freesurfer lh.pial format
to ascii (.asc) causes a shift in the coordinates of the mesh. You can see
this by overlaying the two surfaces in freeview, and looking at the
difference between the [0 0 0] surface RAS coordinate in lh.pial vs
lh.pi
