Re: [Freesurfer] mris_calc problem

2011-09-19 Thread Dalwani, Manish
Hello Freesurfer's If tkmedit shows the T1 image in radiological convention, then what convention does the surface reconstruction follow? Please advice! Regards, Manish Dalwani ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nm

Re: [Freesurfer] mris_calc problem

2011-09-19 Thread Nick Schmansky
i've put the updated mris_calc for macos leopard here: https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/macos-leopard-intel/ On Mon, 2011-09-19 at 14:47 -0500, Dabbs (Kevin) wrote: > I have ran into a problem with mris_calc using Freesurfer 5.1 on Mac > OS Leopard. When running long_

Re: [Freesurfer] mris_calc problem

2011-09-19 Thread Rudolph Pienaar
The problem was a bug related to a buffer overflow on the string lengths of command line arguments. Basically, filename/directory names that were too long triggered it. Nick might know if a newer Mac build is available. In the meantime, you can try re-running the command with shorter file/dir n

[Freesurfer] mris_calc problem

2011-09-19 Thread Dabbs (Kevin)
I have ran into a problem with mris_calc using Freesurfer 5.1 on Mac OS Leopard. When running long_mris_slopes I am getting this error; ERROR 1 : mris_calc compute sym. pct. change (spc) problem? It seems to running properly until it hits; mris_calc -o /Volumes/larry/cluster_results/1007base3/