Re: [Freesurfer] mris_ca_train / mris_ca_label problem

2012-12-05 Thread Bruce Fischl
sorry, I don't have the original email anymore. How did you create lh.ico3_morph.annot? On Wed, 5 Dec 2012, Roan LaPlante wrote: No, it is empty in tksurfer.  But lh.ico3_morph.annot shows up fine.  Somewhere in mris_ca_train or mris_ca_label something seems to go wrong. thanks, R On Wed,

Re: [Freesurfer] mris_ca_train / mris_ca_label problem

2012-12-05 Thread Roan LaPlante
No, it is empty in tksurfer. But lh.ico3_morph.annot shows up fine. Somewhere in mris_ca_train or mris_ca_label something seems to go wrong. thanks, R On Wed, Dec 5, 2012 at 8:20 PM, Bruce Fischl wrote: > Hi Roan > So > > /autofs/cluster/neuromind/rlaplant/mridat/nmr00535_FS/label/lh.icotest.an

Re: [Freesurfer] mris_ca_train / mris_ca_label problem

2012-12-05 Thread Bruce Fischl
Hi Roan So /autofs/cluster/neuromind/rlaplant/mridat/nmr00535_FS/label/lh.icotest.annot Looks ok when loaded in tksurfer? Bruce On Dec 5, 2012, at 4:34 PM, Roan LaPlante wrote: > /autofs/cluster/neuromind/rlaplant/mridat/nmr00535_FS/label/lh.icotest.annot _

[Freesurfer] mris_ca_train / mris_ca_label problem

2012-12-05 Thread Roan LaPlante
Hello freesurfer experts, I am having difficulties using mris_ca_train and mris_ca_label. I am trying to get third party-software to accept a user-defined parcellation in the form of a .gcs file, which I created from sample data using mris_ca_train. I have reproduced the portion of the workflow