Re: [Freesurfer] mri_vol2vol anatomical to functional

2022-04-04 Thread Douglas N. Greve
Have you visually verified that the registration is correct (only work with LTAs) using tkregisterfv ? How are you viewing the combined anatomical/functional in pics? If you just load the functional without a registration file, then that is not right. On 3/29/2022 11:28 AM, Manenti, Giorgio wr

Re: [Freesurfer] mri_vol2vol anatomical to functional

2022-03-31 Thread Manenti, Giorgio
.09113 -0.03433 -2.19744 198.19705; -0.07530 -2.01747 0.04112 244.54424; 0.0 0.0 0.0 1.0; Resampling Output registration matrix is identity mri_vol2vol done Many thanks again, Best Giorgio Message: 10 Date: Sun, 27 Mar 2022 17:16:25 -0400 From: "Douglas N.

Re: [Freesurfer] mri_vol2vol anatomical to functional

2022-03-27 Thread Douglas N. Greve
I'm not sure I understand what you are saying or what the problem is. Can you provide the actual command line you are using, all the terminal output, and a picture that shows what the problem is? On 3/23/2022 2:46 PM, Manenti, Giorgio wrote: > External Email - Use Caution > > Dear Frees

[Freesurfer] mri_vol2vol anatomical to functional

2022-03-23 Thread Manenti, Giorgio
External Email - Use Caution Dear Freesurfer experts, I am getting problems to transform my xh.ribbon.mgh from anatomical 256x256x256 to functional 104x104x69 space. When converting the ribbon via “ mri_vol2vol —reg REGfile —mov INPUT —targ funcTEMPLATE —o OUTPUT “ and checki