Re: [Freesurfer] mri_vol2surf --prodist measuring from pial surface

2014-12-04 Thread Douglas N Greve
Yes doug On 12/04/2014 03:41 PM, Kirstie Whitaker wrote: > Thank you, Doug. > > Can I just check that projdist is the same as projabs but with a > different name? > > Just in case I'm using an old/wrong version, here's the last line from > the mri_vol2surf help output: > $Id: mri_vol2surf.c,v 1

Re: [Freesurfer] mri_vol2surf --prodist measuring from pial surface

2014-12-04 Thread Kirstie Whitaker
Sorry - if anyone's looking at this in the future, you also need --regheader in the command: mri_vol2surf --mov \ --o $ \ --projdist -2 \ --interp nearest \ --surf pial \

Re: [Freesurfer] mri_vol2surf --prodist measuring from pial surface

2014-12-04 Thread Kirstie Whitaker
Thank you, Doug. Can I just check that projdist is the same as projabs but with a different name? Just in case I'm using an old/wrong version, here's the last line from the mri_vol2surf help output: $Id: mri_vol2surf.c,v 1.63 2011/03/05 01:11:14 jonp Exp $ >From that help and your email I'm loo

Re: [Freesurfer] mri_vol2surf --prodist measuring from pial surface

2014-12-02 Thread Douglas Greve
You can spec the surface to be pial (instead of the default white). Then spec --projabs to specify the distance into cortex (using negative numbers). doug On 11/27/14 1:24 PM, Kirstie Whitaker wrote: Hi, I was wondering if it's possible to sample x mm from the pial surface using mri_vol2sur

[Freesurfer] mri_vol2surf --prodist measuring from pial surface

2014-11-27 Thread Kirstie Whitaker
Hi, I was wondering if it's possible to sample x mm from the pial surface using mri_vol2surf (or another tool!). The point is that I'd like to be agnostic about exactly where the grey/white matter boundary lies. I've had a look through the help for mri_vol2surf and nothing's jumping out at me, is