Hi Srishti, you will need to be much more specific to allow me to help
you. mni152_subject is not a file that can be input to recon-all (it
should be a dicom or nifti or mgz). If you use the same input to
recon-all that you used to view it in spm, then the FS output should
align with your map.
What is the "MNI template" that you are using. I mean an exact file
used. Did you use this file when you ran recon-all?
On 04/12/2018 10:23 AM, srishti goel wrote:
> Yeah, I am unsure where to go from here as well. So the results can be
> viewed in SPM and on the MNI template space itself, sinc
Yeah, I am unsure where to go from here as well. So the results can be
viewed in SPM and on the MNI template space itself, since SPM typically
does not have a problem showing multiple images in different sizes.
Best,
Srishti
Social/Clinical Research Specialist
Child Imaging Research and Life Exper
When you use bbregister, it is expecting the input nii file to represent
the actual anatomy of the subject, so it does not surprise me that it
does not work that well. I'm not sure what to do about this because a
meta analysis image will never have decent anatomy. In theory, it should
be alread
don't use --init-rr ( you don't need to spec an init in version 6)
On 4/10/18 9:48 PM, srishti goel wrote:
When I run bbregister, it gives me an error. Attached is the
register.dat.log file for it.
Error:
reading source './tmp.bbregister.91068/template.nii'...
mri_robust_register.bin: only p
When I run bbregister, it gives me an error. Attached is the
register.dat.log file for it.
Error:
reading source './tmp.bbregister.91068/template.nii'...
mri_robust_register.bin: only pass single frame MRI source
./tmp.bbregister.91068/template.nii.
No such file or directory
Any help is great
They are not in registration. Try running bbregister to create a
registration file (lta), then pass the lta to tkregisterfv instead of
--regheader
On 4/9/18 11:49 PM, Bruce Fischl wrote:
How did you generate the registration? And give us the details of what
you are trying to register
Cheers
How did you generate the registration? And give us the details of what you are
trying to register
Cheers
Bruce
> On Apr 8, 2018, at 2:55 PM, srishti goel <23srishtig...@gmail.com> wrote:
>
> Hi Bruce,
>
> Thanks so much for pointing that out, I totally missed that part.
>
> Also, the registra
Hi Srishti
the directory you are in doesn't matter. YOu either need to set
SUBJECTS_DIR in the environment, or use --sd to specify the
directory that contains your subjects. I think you can also give it the
full path to a target volume if you want, but maybe Doug can comment as he
knows this
When I type this command:
tkregisterfv --mov negative_allsocial_proportion.nii --regheader --s
mni152_subject --surfs --reg reg.deleteme.dat
It gives me the error: cannot find mni152_subject.
Although I clearly checked that the directory from which I am submitting
this command has the mni152_subje
Those commands look ok. My suspicion goes to the use of --regheader. See
whether the registration is ok with
tkregisterfv --mov negative_allsocial_proportion.nii --regheader --s
mni152_subject --surfs --reg reg.deleteme.dat
On 04/05/2018 08:34 AM, srishti goel wrote:
> Hi,
>
> I am trying to c
Hi,
I am trying to compare my volume maps (negative_allsocial_proportion.nii)
to someone else's (SN_like_cortical_lh.nii.gz) who have it on a surface
(mni152_subject). So I used the steps for mri_vol2surf command as follows:
Commands:
mri_vol2surf --src negative_allsocial_proportion.nii --reghead
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