Re: [Freesurfer] mri_surf2surf failure in FS6.0

2017-10-24 Thread dongnandi1
Hi Doug, Thanks very much for your reply. The mri_vol2surf command line i used is: mri_vol2surf --mov brainmask.nii.gz --reg bbregister.dof6.dat --trgsubject fsaverage --interp trilin --projfrac 0.5 --hemi ${hemi} --o brainmask.fsaverage.${hemi}.nii.gz --noreshape --cortex --surfreg sphere.reg

Re: [Freesurfer] mri_surf2surf failure in FS6.0

2017-10-24 Thread Douglas Greve
Hi dong, sorry for the delay. What is your mri_vol2surf command line? On 10/20/17 4:44 AM, Dongnandi wrote: Dear Freesurfer experts, I have a binary brainmask made in volumetric space and trying to transfer it into surface space,  first I use mri_vol2surf to transfer the mask into fsaverage

[Freesurfer] mri_surf2surf failure in FS6.0

2017-10-20 Thread Dongnandi
Dear Freesurfer experts, I have a binary brainmask made in volumetric space and trying to transfer it into surface space, first I use mri_vol2surf to transfer the mask into fsaverage space, then run mri_surf2surf (fs 6.0) to down sample it to fsaverage5 space. After vol2surf, some values