Re: [Freesurfer] mri_robust_template in FMRIprep rotation should not scale error

2019-08-19 Thread Dylan Nielson
External Email - Use Caution Hi Martin, Have you had a chance to take a look at this? Is there any other information you’d need? Thanks, Dylan On Thu, Aug 15, 2019 at 8:39 AM Dylan Nielson wrote: > Thanks for taking a look at this Martin. I've uploaded the files to my > googl

Re: [Freesurfer] mri_robust_template in FMRIprep rotation should not scale error

2019-08-15 Thread Dylan Nielson
External Email - Use Caution Thanks for taking a look at this Martin. I've uploaded the files to my google drive, you should be able to find them here: https://drive.google.com/open?id=1GmdgXr0kFP10YYw6Wk8Vio7_dcZHNYL4 I've put each subject in their own directory along with the in

Re: [Freesurfer] mri_robust_template in FMRIprep rotation should not scale error

2019-08-14 Thread Martin Reuter
Hi, To debug this, I would need the 4 input images and the command. Of course the error would need to also come up when using those images.Best MartinAm 14.08.2019 20:01 schrieb "Greve, Douglas N.,Ph.D." :I have not seen it before; I've cc'ed Martin in case he has seen it. Have you checked the un

Re: [Freesurfer] mri_robust_template in FMRIprep rotation should not scale error

2019-08-14 Thread Greve, Douglas N.,Ph.D.
I have not seen it before; I've cc'ed Martin in case he has seen it. Have you checked the underlying data to make sure that there are no artifacts, etc? On 8/13/19 8:02 AM, Dylan Nielson wrote: > > External Email - Use Caution > > Hi Freesurfer folks, > > I'm running Freesurfer's longitu

Re: [Freesurfer] mri_robust_template in FMRIprep rotation should not scale error

2019-08-14 Thread Dylan Nielson
External Email - Use Caution Hi Freesurfer folks, Has anyone seen this error before with the longitudinal pipeline: Internal Error: Rotation should not scale. Return code: 248 Thanks, Dylan On Tue, Aug 13, 2019 at 8:02 AM Dylan Nielson wrote: > Hi Freesurfer folks, > > I'm

[Freesurfer] mri_robust_template in FMRIprep rotation should not scale error

2019-08-13 Thread Dylan Nielson
External Email - Use Caution Hi Freesurfer folks, I'm running Freesurfer's longitudinal pipeline as part of FMRIprep and I've got two subjects generating similar errors in the mri_robust_template step, one of which I've copied below. I've defaced these subjects and saved the worki