Hi Jeff,
sorry, I don't know what causes the nu_correct to do this, but you'll
probably have to skip that step as otherwise you've lost too much dynamic
range. I would try copying orig.mgz to nu.mgz and running all the steps
afterwards.
cheers
Bruce
On Wed, 7 Oct 2009, Jeff Sadino wrote:
> He
Hello,
I asked this question a couple days ago, but never got an answer.
Please excuse the double posting.
I am running FS 3 and am having problems with auto-recon1, in particular the
mri_nu_correct.mni step. My orig volume has intensities around 150-250, but my
nu.mgz image has intensities all b
Hello,
I am running FS 3 and am having problems with auto-recon1, in particular the
mri_nu_correct.mni step. My orig volume has intensities around 150-250, but my
nu.mgz image has intensities all below 20. I am having errors further down the
line, but I think they are all due to this step. C
