Re: [Freesurfer] mri_label2vol problem

2013-07-01 Thread LAOUCHEDI MAKHLOUF
De : Douglas N Greve À : LAOUCHEDI MAKHLOUF Cc : "freesurfer@nmr.mgh.harvard.edu" Envoyé le : Vendredi 28 juin 2013 21h23 Objet : Re: [Freesurfer] mri_label2vol problem Hi Laouchedi, I still cannot figure out why you are getting a volume of all 0s. Are you sure it is all 0s an

Re: [Freesurfer] mri_label2vol problem

2013-06-28 Thread LAOUCHEDI MAKHLOUF
013 18h41 Objet : Re: [Freesurfer] mri_label2vol problem Hi Laouchedi, I have asked you two times now to include all previous correspondences in each email. This is the 3rd time. If you are going to make it hard for us to answer your question, then the result will be that they won't be answ

Re: [Freesurfer] mri_label2vol problem

2013-06-28 Thread LAOUCHEDI MAKHLOUF
ve À : freesurfer@nmr.mgh.harvard.edu Envoyé le : Vendredi 28 juin 2013 16h49 Objet : Re: [Freesurfer] mri_label2vol problem How does the annot look on the surface (ie, intksurfer)? What is the full terminal output of mri_label2vol? On 06/28/2013 10:19 AM, LAOUCHEDI MAKHLOUF wrote: > Hi >

[Freesurfer] mri_label2vol problem

2013-06-28 Thread LAOUCHEDI MAKHLOUF
excuse me but i don't understand what you mean by "terminal of mri_label2vol" Thank you for help ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is i

Re: [Freesurfer] mri_label2vol problem

2013-06-28 Thread Douglas N Greve
How does the annot look on the surface (ie, intksurfer)? What is the full terminal output of mri_label2vol? On 06/28/2013 10:19 AM, LAOUCHEDI MAKHLOUF wrote: > Hi > i run mri_label2annot to get individual annot files for all > labels, then i run mri_label2vol to get nifti volumes of my labe

[Freesurfer] mri_label2vol problem

2013-06-28 Thread LAOUCHEDI MAKHLOUF
Hi i run mri_label2annot to get individual annot files for all labels, then i run mri_label2vol to get nifti volumes of my labels using the following command :   mri_label2vol --annot  lh.G_and_S_cingul-Ant.annot --temp SUBJ_DIR/ctr2/mri/brain.mgz --subject ctr2 --hemi lh --identity --