Re: [Freesurfer] mri_label2vol: Brodmann Areas

2013-02-25 Thread Douglas N Greve
You will have to merge the labels into an annotation (mris_label2annot), then the annotation to a segmentation volume (mri_aparc2aseg), then apply mri_label2vol to the segmentation. doug On 02/19/2013 10:45 AM, Vincent Koppelmans wrote: > Hi all, > > I am trying to convert Brodmann area 4a and

[Freesurfer] mri_label2vol: Brodmann Areas

2013-02-19 Thread Vincent Koppelmans
Hi all, I am trying to convert Brodmann area 4a and 4p to .nii file format in native space. I have used to following syntax: tkregister2 --mov ${SUBJECTS_DIR}/mri/rawavg.mgz --noedit --s [SUBJECT_ID] --regheader --reg ./register.dat mri_label2vol --label [PATH-TO-LABEL-FILE] --temp ${SUBJECT