>> Sent: Friday, November 11, 2016 4:35 PM
>> To: freesurfer@nmr.mgh.harvard.edu
>> Subject: Re: [Freesurfer] mri_info --tkr2scanner result for run with
>> multiple input
>> scans
>>
>> If the head has not moved, then they will share a scanner RAS, ie, a gi
sage-
> From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-
> boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
> Sent: Friday, November 11, 2016 4:35 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] mri_info --tkr2scanner result for run with
6 3:22 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] mri_info --tkr2scanner result for run with multiple
> input scans
>
> -tkr2scanner gives the transform that takes "tkregister RAS" and
> converts it to scanner RAS. "tkregisterRAS" is
_
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve
[gr...@nmr.mgh.harvard.edu]
Sent: Friday, November 11, 2016 3:22 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] mri_info --tkr2scanner result for run with multiple
i
-tkr2scanner gives the transform that takes "tkregister RAS" and
converts it to scanner RAS. "tkregisterRAS" is the RAS system used by
surfaces (it, a vertex xyz is in tkregisterRAS). See
http://surfer.nmr.mgh.harvard.edu/fswiki/CoordinateSystems
On 11/10/2016 09:33 PM, Krieger, Donald N. wro
If I run recon-all with both a T1 and a T2 scan and switch t2pial, does
mri_info -tkr2scanner give me the transform to the T1 scanner frame of
reference?
And if I run recon-all with many T1's , what does mri_info -tkr2scanner give me
then?
Thanks - Don
