You can create a surface overlay in matlab and display it using
freeview. See
https://gate.nmr.mgh.harvard.edu/safelinks/greve/annotval2surfoverlay.m
To read it into matlab, you can run
pcc = MRIread('pcc.mgh');
You can convert it to text with mri_convert --ascii pcc.mgh outputtextfile
On 6/2
External Email - Use Caution
Hello FreeSurfer Users,
I want to run an ROI-based analysis on mri_glmfit as opposed to vertex-based. I
know that if I run mri_glmfit with the --table flag and give it the output of
asegstats2table or aparcstats2table, it will run the analysis on th
eesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
> Sent: Tuesday, April 01, 2014 4:41 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] mri_glmfit question
>
>
> what does the max vox have to do with the search space? I'm not sure what
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
Sent: Tuesday, April 01, 2014 4:41 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] mri_glmfit question
what does the max vox have
what does the max vox have to do with the search space? I'm not sure
what the problem is here.
dough
On 04/01/2014 05:05 PM, Govindarajan, Koushik Athreya wrote:
>
> Dear all,
>
> I am trying to run a group analysis between 2 groups of subjects. I
> did the mris_preproc and mri_surf2surf steps.
Dear all,
I am trying to run a group analysis between 2 groups of subjects. I
did the mris_preproc and mri_surf2surf steps. When I set up my mri_glmfit, the
end of the output is:
Reshaping mriglm->mask...
search space = 74485.691578
DOF = 1344
Starting fit and test
Fit completed in 0
