Re: [Freesurfer] mri_glmfit and --mask

2012-10-02 Thread Douglas Greve
Hi, don't use --label and --mask. doug On 10/2/12 9:15 PM, Brain Apprentice wrote: > Hello everyone, > > I am trying to incorporate a binary FMRI mask into mri_glmfit. The > problem is that it does not matter what I put in for the mask file I > get the same results. > > This is the command I am u

[Freesurfer] mri_glmfit and --mask

2012-10-02 Thread Brain Apprentice
Hello everyone, I am trying to incorporate a binary FMRI mask into mri_glmfit. The problem is that it does not matter what I put in for the mask file I get the same results. This is the command I am using: mri_glmfit \ --y /shared/subjects/4-aut-v510/a-aut-v510/3-long/qdec/test2/y.mgh \ --