Re: [Freesurfer] mri_fieldsign error

2020-07-21 Thread Xiaomin Yue
t list<mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] mri_fieldsign error External Email - Use Caution Yes. I will try it on a real Linux box and let you know. Thanks, Xiaomin From: Douglas N. Greve<mailto:dgr...@mgh.harvard.edu> Sent: Friday, July 1

Re: [Freesurfer] mri_fieldsign error

2020-07-17 Thread Xiaomin Yue
ilto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] mri_fieldsign error No, it does not. The only other problem I can think of is that it has something to do with WSL. Do you have a real linux box you can try it on? On 7/17/2020 5:24 PM, Xiaomin Yue wrote: External Email - U

Re: [Freesurfer] mri_fieldsign error

2020-07-17 Thread Douglas N. Greve
rd.edu <mailto:freesurfer@nmr.mgh.harvard.edu> *Subject: *Re: [Freesurfer] mri_fieldsign error I was not able to replicate this on my CentOS7 linux box. You sent me left hemi data, so I ran the command below mri_fieldsign --fs fieldsign.71.nii.gz --polar LOO.wedge.polar.lh

Re: [Freesurfer] mri_fieldsign error

2020-07-17 Thread Douglas N. Greve
I was not able to replicate this on my CentOS7 linux box. You sent me left hemi data, so I ran the command below mri_fieldsign --fs fieldsign.71.nii.gz --polar LOO.wedge.polar.lh.real.nii.gz LOO.wedge.polar.lh.imag.nii.gz --eccen LOO.ring.eccen.lh.real.nii.gz LOO.ring.eccen.lh.imag.nii.gz --s

Re: [Freesurfer] mri_fieldsign error

2020-07-16 Thread Douglas N. Greve
oblem. Thanks, Xiaomin *From: *Douglas N. Greve <mailto:dgr...@mgh.harvard.edu> *Sent: *Wednesday, July 15, 2020 11:15 AM *To: *freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> *Subject: *Re: [Freesurfer] mri_fieldsign error I don't know what is going

Re: [Freesurfer] mri_fieldsign error

2020-07-15 Thread Xiaomin Yue
nesday, July 15, 2020 11:15 AM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] mri_fieldsign error I don't know what is going wrong here. One simple thing to check is to make sure that all the input files have the same number of vertic

Re: [Freesurfer] mri_fieldsign error

2020-07-15 Thread Douglas N. Greve
m> *Sent: *Saturday, July 11, 2020 1:43 PM *To: *Freesurfer support list <mailto:freesurfer@nmr.mgh.harvard.edu> *Subject: *[Freesurfer] mri_fieldsign error *External Email - Use Caution * Hi Doug, I used FS 7.1 under WSL to analyze retinotopy data.  Since the ring and wedge we

Re: [Freesurfer] mri_fieldsign error

2020-07-15 Thread Xiaomin Yue
[Freesurfer] mri_fieldsign error External Email - Use Caution Hi Doug, I used FS 7.1 under WSL to analyze retinotopy data. Since the ring and wedge were presented at a different frequency, the data had to be analyzed separately for each condition. To get the field sign, I had to use the m

[Freesurfer] mri_fieldsign error

2020-07-11 Thread Xiaomin Yue
External Email - Use Caution Hi Doug, I used FS 7.1 under WSL to analyze retinotopy data. Since the ring and wedge were presented at a different frequency, the data had to be analyzed separately for each condition. To get the field sign, I had to use the mri_fieldsign functio