Re: [Freesurfer] mri_em_register and mri_ca_register

2018-01-24 Thread Ricardo Valle
Hi Bruce, Great! Thanks for replying so quickly! Is there any way I or someone can add links to the articles on the corresponding wiki pages? Cheers! Ruy > On Jan 24, 2018, at 5:28 PM, Bruce Fischl wrote: > > Hi Ruy, > > yes, that is all correct. The last one (and the follow-on article about

Re: [Freesurfer] mri_em_register and mri_ca_register

2018-01-24 Thread Bruce Fischl
Hi Ruy, yes, that is all correct. The last one (and the follow-on article about diffusion with Lilla Zollei as first author) is about CVS (combined volume and surface registration) cheers Bruce On Wed, 24 Jan 2018, Ricardo Valle wrote: Hi Bruce, I would like to confirm the relationship betw

Re: [Freesurfer] mri_em_register and mri_ca_register

2018-01-24 Thread Ricardo Valle
Hi Bruce, I would like to confirm the relationship between a few papers and the algorithms they describe. Does Sequence-independent segmentation of magnetic resonance images (Fischl et al., 2004) describe mri_ca_register, Whole Brain Segmentation: Automated Labeling of Neuroanatomical Structur

Re: [Freesurfer] mri_em_register and mri_ca_register

2018-01-18 Thread Ricardo Valle
I see. Thank you very much! Cheers, Ruy > On Jan 18, 2018, at 1:24 PM, Bruce Fischl wrote: > > Hi Ruy > > they both register to a .gca atlas that is quite a bit more accurate than > the MNI. The details are in the 2002 and 2004 papers. > > cheers > Bruce > On Thu, 18 Jan 2018, > Ricardo Valle

Re: [Freesurfer] mri_em_register and mri_ca_register

2018-01-18 Thread Bruce Fischl
Hi Ruy they both register to a .gca atlas that is quite a bit more accurate than the MNI. The details are in the 2002 and 2004 papers. cheers Bruce On Thu, 18 Jan 2018, Ricardo Valle wrote: > Dear Freesurfer community, > > I would like to get a better sense of how mri_em_register and mri_ca_re

[Freesurfer] mri_em_register and mri_ca_register

2018-01-18 Thread Ricardo Valle
Dear Freesurfer community, I would like to get a better sense of how mri_em_register and mri_ca_register work. I understand the former is a linear registration and the latter is nonlinear, and that they are both meant to register an individual to a template space (MNI152?). Would it be possib