Re: [Freesurfer] mri_deface keeps seg faulting

2018-04-17 Thread Warner, Graham Cary
That worked, thanks! From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Dicamillo, Robert Sent: Tuesday, April 17, 2018 11:47:02 AM To: Freesurfer support list Subject: Re: [Freesurfer] mri_deface keeps seg faulting Can you ls /usr/local/freesurfer

Re: [Freesurfer] mri_deface keeps seg faulting

2018-04-17 Thread Dicamillo, Robert
Can you ls /usr/local/freesurfer/stable6/bin If so, you could put that at the start of your path to get the release 6 binaries. -rob On Apr 17, 2018, at 11:39 AM, Warner, Graham Cary mailto:gwar...@mgh.harvard.edu>> wrote: Hi, I'm trying to deface an MEMPRAGE dataset using the following comma

[Freesurfer] mri_deface keeps seg faulting

2018-04-17 Thread Warner, Graham Cary
Hi, I'm trying to deface an MEMPRAGE dataset using the following command: [jazz:test_deface] (nmr-stable53-env) mri_deface outSubDir/mri/orig/001.mgz talairach_mixed_with_skull.gca face.gca sample_T1_input_defaced.mgz and am getting the output: logging results to sample_T1_input_defaced.lo