Re: [Freesurfer] mri_convert mosaic dicoms

2023-03-27 Thread Douglas N. Greve
it might be. That override was for a particular experimental case, but if it works, it works On 3/27/2023 2:06 PM, John Anderson wrote: External Email - Use Caution Thank you, Dr Greve.  I tried it, but it didn't work. By 'didn't work,' I mean that when I visualized the NIfTI file, I

Re: [Freesurfer] mri_convert mosaic dicoms

2023-03-27 Thread John Anderson
External Email - Use Caution Thank you, Dr Greve. I tried it, but it didn't work. By 'didn't work,' I mean that when I visualized the NIfTI file, I saw a line on the coronal and sagittal planes, and the whole brain on the axial view. I was able to generate a NIfTI image with multi

Re: [Freesurfer] mri_convert mosaic dicoms

2023-03-27 Thread Douglas N. Greve
Can you try it with --dcm2niix ? On 3/25/2023 9:43 AM, John Anderson wrote: External Email - Use Caution Dear Dr Doug Greeve, For each participant in my dataset, I have 8 mosaic volumes with 36 slices each. I am trying to convert the DICOM files to Nifti format using the mri_convert

[Freesurfer] mri_convert mosaic dicoms

2023-03-25 Thread John Anderson
External Email - Use Caution Dear Dr Doug Greeve, For each participant in my dataset, I have 8 mosaic volumes with 36 slices each. I am trying to convert the DICOM files to Nifti format using the mri_convert command in FreeSurfer version 7.3.2. However, the conversion process fails