[Freesurfer] mri_convert in 4D

2006-04-11 Thread Julia Hamstra
I am viewing it with tkmedit. For the timeseries, it only displayed some of it. I also tried viewing it with fslview. There it was a single dashed line in the coronal view. Here is the output:mri_convert -it dicom -ot nii i6757552.MRDC.1 run.nii.gz reading from i6757552.MRDC.1...1260 DICOM 3.0 fil

Re: [Freesurfer] mri_convert in 4D

2006-04-08 Thread Bruce Fischl
how are you displaying it? And can you send the entire output? On Fri, 7 Apr 2006, Julia Hamstra wrote: Hi, I am getting two errors when creating NIFTI files from dicoms using mri_convert. The first is that the 4D images are being spatially contactonated. It does not seem to be treating it as

[Freesurfer] mri_convert in 4D

2006-04-07 Thread Julia Hamstra
Hi, I am getting two errors when creating NIFTI files from dicoms using mri_convert. The first is that the 4D images are being spatially contactonated. It does not seem to be treating it as a timeseries. This is the command:  mri_convert -it dicom -ot nii s6761334/i6761335.MRDC.1 run.nii.gz Addi