Re: [Freesurfer] mri_convert fails for enhanced MR IOD DICOMs

2007-02-21 Thread Bruce Fischl
I see. I'll defer to Doug on this. On Wed, 21 Feb 2007, Martin Kavec wrote: Hi Bruce, On Wednesday 21 February 2007 20:25, Bruce Fischl wrote: Hi Martin, what is IOD? We use multiframe images (multiecho) all the time using: IOD stands for Information Object Definition, but is it not that i

Re: [Freesurfer] mri_convert fails for enhanced MR IOD DICOMs

2007-02-21 Thread Martin Kavec
Hi Bruce, On Wednesday 21 February 2007 20:25, Bruce Fischl wrote: > Hi Martin, > > what is IOD? We use multiframe images (multiecho) all the time using: IOD stands for Information Object Definition, but is it not that important. What is important is that my 3D volume is not stored in a director

Re: [Freesurfer] mri_convert fails for enhanced MR IOD DICOMs

2007-02-21 Thread Doug Greve
I've never seen this flavor of DICOM before. What kind of scanner do you have? Can you upload them to: https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html doug Martin Kavec wrote: Hi, our MR scanner produces DICOMs with enhance MR IOD, i.e. multiframe image file. When I try to

Re: [Freesurfer] mri_convert fails for enhanced MR IOD DICOMs

2007-02-21 Thread Bruce Fischl
Hi Martin, what is IOD? We use multiframe images (multiecho) all the time using: mri_convert -nth $echono output_echo${echono}.mgz what error do you get? Bruce On Wed, 21 Feb 2007, Martin Kavec wrote: Hi, our MR scanner produces DICOMs with enhance MR IOD, i.e. multiframe image file. W

[Freesurfer] mri_convert fails for enhanced MR IOD DICOMs

2007-02-21 Thread Martin Kavec
Hi, our MR scanner produces DICOMs with enhance MR IOD, i.e. multiframe image file. When I try to use this format with FreeSurfer mri_convert fails. I assume it is not designed for this type of images, isn't it? Anybody knows a workaround? Thanks in advance for help (and great software), Ma