Re: [Freesurfer] mri_convert: Segmentation fault (core dumped) synthsr scan

fer-boun...@nmr.mgh.harvard.edu > On Behalf Of KennethSPrice > Sent: Sunday, September 17, 2023 11:35 AM > To: Freesurfer support list > Subject: Re: [Freesurfer] mri_convert: Segmentation fault (core dumped) > synthsr scan > > External Email - Use Caution > > I'

Re: [Freesurfer] mri_convert: Segmentation fault (core dumped) synthsr scan

%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg74552.html Hope this helps. Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of KennethSPrice Sent: Sunday, September 17, 2023 11:35 AM To: Freesurfer support list Subject: Re: [Freesurfer] mri_convert: Segmentation fault (core dumped

Re: [Freesurfer] mri_convert: Segmentation fault (core dumped) synthsr scan

External Email - Use Caution I've set the coredumpsize to unlimited, and still get the same error. Could it be something with the installation? build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 Linux DESKTOP-MRI 4.4.0-19041-Microsoft #3393-Microsoft Mon Aug 14 14

Re: [Freesurfer] mri_convert: Segmentation fault (core dumped) synthsr scan

External Email - Use Caution Hello Ken, The output from your linux shell limits in the log show the following, cputime      unlimitedfilesize     unlimiteddatasize     unlimitedstacksize    8192 kbytescoredumpsize 0 kbytesmemoryuse    unlimitedvmemoryuse   unlimiteddescriptors 

Re: [Freesurfer] mri_convert: Segmentation fault (core dumped) synthsr scan

External Email - Use Caution OK, I've attached the log file. --- Original Message --- On Friday, September 15th, 2023 at 2:59 PM, fsbuild wrote: > External Email - Use Caution > > It might help if you could send along the crash report as an attachment.. > > -R. > >> On S

Re: [Freesurfer] mri_convert: Segmentation fault (core dumped) synthsr scan

External Email - Use Caution  It might help if you could send along the crash report as an attachment. -R. On Sep 15, 2023, at 14:36, KennethSPrice wrote:External Email - Use CautionUpdate: I tried running recon-all (5.1, ubuntu 18

Re: [Freesurfer] mri_convert: Segmentation fault (core dumped) synthsr scan

External Email - Use Caution Update: I tried running recon-all (5.1, ubuntu 18) on a sample MPRAGE scan and got the "mri_convert: segmentation fault (core dumped)" error again. Any clarity on this issue would be appreciated. Thanks, K --- Original Message --- On Thursday

[Freesurfer] mri_convert: Segmentation fault (core dumped) synthsr scan

External Email - Use Caution Howdy yall, I ran a subject through synthsr (freesurfer 7.4) and am trying to run the output through the freesurfer 5.1 pipeline (the rest of my dataset was processed with 5.1). I am getting the error "Segmentation fault (core dumped)" during the mr