Re: [Freesurfer] mri_cnr label flag

2020-05-28 Thread Bruce Fischl
Hi Prad if you use the cortex.label is will avoid using the non-cortical regions in the surface, like the midline, so should be a more accurate measure cheers Bruce On Thu, 28 May 2020, Pradyumna Bharadwaj wrote: External Email - Use Caution Hi, I had a question about th

[Freesurfer] mri_cnr label flag

2020-05-28 Thread Pradyumna Bharadwaj
External Email - Use Caution Hi, I had a question about the -label flag in mri_cnr. 1) When you do not use the -label option and just use the following command: mri_cnr $FREESURFER_HOME/subjects/bert/surf $FREESURFER_HOME/subjects/bert/mri/norm.mgz The output is as follows w