Re: [Freesurfer] mri_ca_label problem

2013-02-19 Thread Bruce Fischl
, 19 Feb 2013 16:35:50 -0500 > From: fis...@nmr.mgh.harvard.edu > To: horton_p...@hotmail.com > CC: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] mri_ca_label problem > > Hi Paul > > is this within recon-all? Does that file exist? Can you check its > perm

Re: [Freesurfer] mri_ca_label problem

2013-02-19 Thread Bruce Fischl
Hi Paul is this within recon-all? Does that file exist? Can you check its permissions to make sure it is writeable? And that you have enough disk space? Are any error messages printed? Bruce On Tue, 19 Feb 2013, paul horton wrote: Hi guys, I am wondering if you can help me. I have run comm

[Freesurfer] mri_ca_label problem

2013-02-19 Thread paul horton
Hi guys,I am wondering if you can help me.I have run command: mri_ca_label -align -nobigventricles norm.mgz transforms/talairach.m3z $FREESURFER_HOME/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz, on a 3T MPRAGE subject but it fails: i.e. it stops after the 'saving intensity scales to as