Re: [Freesurfer] mri_binarize --rmax option unknown

Thanks very much, Doug! That version works perfectly. Just out of curiosity now, is there potentially a way to create a binarized mask in the other way that I mentioned? That is, to generate a mask that cuts maintains the middle 95% of the data (i.e. +- 2SDs of the signal mean) as a way to remo

Re: [Freesurfer] mri_binarize --rmax option unknown

That was a bug which I have not fixed. Try this one ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_binarize On 06/09/2016 03:53 PM, Lakhani, Bimal wrote: > Good afternoon, > > I am trying to run a fairly simple mri_binarize command on FS v 5.3, > Linux 64bit, but when I use

Re: [Freesurfer] mri_binarize --rmax option unknown

Alternatively, is there another way to calculate the binzarized threshold min and max based on multiples of the standard deviation of the global mean? Thanks! On June 9, 2016 at 12:54:25 PM, Lakhani, Bimal (bimal.lakh...@ubc.ca) wrote: Good afternoon, I am tryin

[Freesurfer] mri_binarize --rmax option unknown

Good afternoon, I am trying to run a fairly simple mri_binarize command on FS v 5.3, Linux 64bit, but when I use the option — rmax, I am getting an error that says the —rmax option is not recognized. It is made weirded because —rmin works perfectly. Here is the command line and the following e