Re: [Freesurfer] mri_aparc2aseg doesn't write output

2020-07-23 Thread Douglas N. Greve
does the mri folder exist? do you have write permission to it? is the disk out of space? On 7/23/2020 11:04 AM, Ellen Ji wrote: External Email - Use Caution Yes, exactly, I am running it from /home/eji/projects/spins/preproc/freesurfer/subjects/w0. (using a virtual machine, but ran

Re: [Freesurfer] mri_aparc2aseg doesn't write output

2020-07-23 Thread Douglas N. Greve
Sorry, it should be from /home/eji/projects/spins/preproc/freesurfer/subjects/w0 (without the /mri) On 7/23/2020 8:37 AM, Ellen Ji wrote: External Email - Use Caution Dear experts, I am running mri_aparc2aseg and, based on the output, it seems to run through successfully until the v

Re: [Freesurfer] mri_aparc2aseg doesn't write output

2020-07-23 Thread Douglas N. Greve
Where are you running the program from? Make sure it is from /home/eji/projects/spins/preproc/freesurfer/subjects/w0/mri On 7/23/2020 8:37 AM, Ellen Ji wrote: External Email - Use Caution Dear experts, I am running mri_aparc2aseg and, based on the output, it seems to run through suc

[Freesurfer] mri_aparc2aseg doesn't write output

2020-07-23 Thread Ellen Ji
External Email - Use Caution Dear experts, I am running mri_aparc2aseg and, based on the output, it seems to run through successfully until the very end where it does not actually write the file (I receive "error: niiWrite(): error opening file mri/aparc.500+2mm.nii.gz"). Howev