Re: [Freesurfer] mri_annotation2labels

2011-06-16 Thread Sudhin A. Shah
Hi Actually, its the opposite. I'm trying to get a volume from the label aka http://brainybehavior.com/neuroimaging/2010/05/converting-cortical-labels-from-freesurfer-to-volumetric-masks/ On 06/16/11, Douglas N Greve wrote: > > If you're trying to create a label from a volume then use mri_cor2

Re: [Freesurfer] mri_annotation2labels

2011-06-16 Thread Douglas N Greve
If you're trying to create a label from a volume then use mri_cor2label. doug Sudhin A. Shah wrote: > Hi, > > I am trying to use this for the aparc+aseg-in-highres.mgz file instead > of the default aparc > > mri_annotation2label --subject AY --hemi lh --outdir > $fsfolder/AY/labels this works >

Re: [Freesurfer] mri_annotation2labels

2011-06-15 Thread Bruce Fischl
What is aparc+aseg-in-highres.mgz? On Jun 15, 2011, at 5:16 PM, "Sudhin A. Shah" wrote: > aparc+aseg-in-highres.mgz ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The informati

[Freesurfer] mri_annotation2labels

2011-06-15 Thread Sudhin A. Shah
Hi, I am trying to use this for the aparc+aseg-in-highres.mgz file instead of the default aparc mri_annotation2label --subject AY --hemi lh --outdir $fsfolder/AY/labelsĀ  this works But how do I specify aparc+aseg-in-highres.mgz I tried --aparc+aseg-in-highres but it was not recognised.. Than