Re: [Freesurfer] mri_annotation2label problem

2012-08-13 Thread Douglas N Greve
Hi Matt, this means that those annotation are empty (ie, have no vertices with that label). Is this the case? Can you verify that those labels actually exist for this subject? doug On 08/10/2012 03:32 PM, mn...@nmr.mgh.harvard.edu wrote: > Hello, > > I'm attempting to use a custom parcellation

[Freesurfer] mri_annotation2label problem

2012-08-10 Thread mnd12
Hello, I'm attempting to use a custom parcellation scheme (Lausanne2008) on fsaverage5. The gcs files I'm using can be found here: https://github.com/LTS5/cmp/tree/master/cmp/data/colortable_and_gcs/my_atlas_gcs The problem I'm getting is when I run mri_annotation2label using the annotation file